pgb-liv/php-ms

PHP Mass Spectrometry Utilities library

phpMs

phpMs is PHP-based free open-source library for proteomics. The library contains a core set of classes for storing common data such as spectra, peptides and proteins. In addition the library contains a number of readers and/or writers for common file formats, including MGF, FASTA, mzIdentML, proBed. The library also contains a number of useful utilities for performing protein digestion, peptide fragmentation, and search engine integration., _(*1)

, _(*2)

, _(*3)

Requirements

• PHP Version 5.4+
  • ext/xsl

Install

To install the library use Composer, _(*4)

composer require pgb-liv/php-ms

Or add it to your existing composer.json:, _(*5)

"require" : {
    "pgb-liv/php-ms" : "1.*"
},

Releases made available by GitHub and the GitHub source do not include depedency code. It is recommended you always use phpMs via Composer., _(*6)

API Documentation

The latest version of the API is available at: http://pgb.liv.ac.uk/ci/phpMs/doc/, _(*7)

Usage Examples

See the phpMs Demo Suite for examples of how to use the API. A live demo is also available via http://pgb.liv.ac.uk/phpMs, _(*8)